Index of /kundaje/pangwei

[ICO]NameLast modifiedSizeDescription

[PARENTDIR]Parent Directory  -  
[TXT]ATAC3-trimmed-pair1.PE2SE_qc.html2016-05-17 10:01 711K 
[TXT]ATAC4-trimmed-pair1.PE2SE_qc.html2016-05-17 10:14 738K 
[   ]ATAC7-trimmed-pair1.PE2SE.nodup.nonchrM.tn5.pf.pval.signal.bigwig2015-11-24 19:06 411M 
[   ]ATAC8-trimmed-pair1.PE2SE.nodup.nonchrM.tn5.pf.pval.signal.bigwig2015-11-24 19:06 291M 
[   ]ATAC9+10_IDR.narrowPeak.gz2016-07-29 17:36 1.6M 
[TXT]ATAC9-trimmed-pair1.PE2SE_qc.html2016-05-25 11:30 707K 
[   ]ATAC9-trimmed-pair1.trim.PE2SE.nodup.25.cc.plot.pdf2016-05-14 14:24 7.0K 
[   ]ATAC11+12-trimmed-pair1.trim.PE2SE.nodup.nonchrM.bam2016-01-07 15:24 1.6G 
[   ]ATAC11+12-trimmed-pair1.trim.PE2SE.nodup.nonchrM.bam.bai2016-01-07 15:28 2.4M 
[   ]ATAC13-trimmed-pair1.PE2SE.nodup.nonchrM.tn5.pf.pval.signal.bigwig2015-11-24 19:01 219M 
[   ]ATAC14-trimmed-pair1.PE2SE.nodup.nonchrM.tn5.pf.pval.signal.bigwig2015-11-24 19:06 180M 
[   ]ATAC21-trimmed-pair1.PE2SE.nodup.nonchrM.tn5.pf.pval.signal.bigwig2015-11-24 19:21 399M 
[   ]ATAC22-trimmed-pair1.PE2SE.nodup.nonchrM.tn5.pf.pval.signal.bigwig2015-11-24 19:21 196M 
[TXT]ATAC_qc.csv2016-06-07 19:42 3.8K 
[DIR]ATAQC/2016-05-19 18:15 -  
[   ]Aligned.sortedByCoord.out.bam2016-01-05 12:36 355M 
[   ]Aligned.sortedByCoord.out.bam.bai2016-01-05 12:37 1.9M 
[DIR]D2_25somitomere-p9c10r2-trimmed-pair1_fastqc/2016-05-16 18:16 -  
[   ]DLL1PXM.bam2016-01-05 12:51 1.0G 
[   ]DLL1PXM.bam.bai2016-01-05 12:51 2.2M 
[   ]Donor-1-day-224-ATAC_read1.trim.PE2SE.nodup.1.tn5.pf.fc.signal.bigwig2016-06-08 18:55 22M 
[   ]E003-H3K9ME3_subsample-0.1e6.cc.plot.pdf2015-10-26 17:22 6.9K 
[   ]E003-H3K9ME3_subsample-0.5e6.cc.plot.pdf2015-10-26 17:23 7.0K 
[   ]E003-H3K9ME3_subsample-0.25e6.cc.plot.pdf2015-10-26 17:22 6.9K 
[   ]E003-H3K27AC_subsample-0.1e6.cc.plot.pdf2015-10-26 16:20 7.2K 
[   ]E003-H3K36ME3_subsample-0.1e6.cc.plot.pdf2015-10-26 17:03 7.2K 
[   ]E006-H3K36ME3_subsample-0.5e6.cc.plot.pdf2015-11-01 17:01 7.1K 
[   ]E017-H3K27ME3_subsample-5e6.cc.plot.pdf2015-11-01 17:09 7.1K 
[IMG]FOXF1.png2015-12-01 15:13 5.6K 
[DIR]GD01-trimmed-pair1_fastqc/2016-05-16 18:02 -  
[   ]GM12878-H3K27AC_merged.bigwig2015-09-09 17:46 290M 
[   ]GM12878-H3K27AC_merged.bigwig.gz2015-09-09 17:47 4.3K 
[   ]GM12878-H3K27AC_merged.bigwig.gz.tbi2015-09-09 17:47 95  
[   ]GM12878-H3K27AC_subsample-0.1e6.cc.plot.pdf2015-10-26 16:20 6.9K 
[   ]GM12878_5+1marks_all_subsample-None_H3K27AC.bw2015-09-14 21:46 161M 
[   ]GM19239-H3K9ME3_subsample-0.1e6.cc.plot.pdf2015-10-26 16:18 6.9K 
[   ]GM19239-H3K27AC_merged_peaks.bed2015-09-15 15:06 1.6M 
[   ]GM19239-H3K27AC_subsample-5e6_peaks.bed2015-09-15 15:06 3.6M 
[   ]GM19239_5+1marks_all_subsample-5e6_H3K27AC.bw2015-09-15 11:16 87M 
[   ]GM19239_5+1marks_all_subsample-5e6_H3K27ME3.bw2015-09-15 11:20 171M 
[   ]GM19239_5+1marks_all_subsample-None_H3K27AC.bw2015-09-15 11:16 149M 
[   ]GM19239_5+1marks_all_subsample-None_H3K27ME3.bw2015-09-15 11:20 231M 
[TXT]GermanCredit.csv2016-07-01 14:44 132K 
[DIR]H7hESC-p7c7r7-trimmed-pair1_fastqc/2016-05-12 16:16 -  
[IMG]HAND1.png2015-12-01 15:13 5.6K 
[   ]ICML_denoising_supplement.pdf2016-05-03 13:50 488K 
[IMG]ISL1.png2015-12-01 15:13 5.6K 
[DIR]LiverRNA/2016-07-26 11:40 -  
[IMG]MSGN1.png2015-12-01 15:13 6.2K 
[   ]Quant.pdf2016-07-26 11:43 8.4K 
[   ]RHE891-ATCACG_S1_L003_R1_001_fastqc_NS001-PE-R00195.zip2016-07-20 18:16 690K 
[TXT]RHE_TPM_DE.csv2016-07-28 17:37 1.1M 
[TXT]RHL_TPM_DE.csv2016-07-26 12:55 2.4M 
[TXT]RHL_TPM_DE_cluster.csv2016-08-11 14:29 1.4M 
[TXT]RHL_TPM_all.csv2016-09-22 17:07 2.8M 
[   ]RNN-20150914-213051066158_H3K27AC.bw2015-09-14 21:34 31K 
[   ]RNN-20150914-214030825226_H3K27AC.bw2015-09-15 00:17 12M 
[   ]RNN-20150914-214030825226_H3K27ME3.bw2015-09-15 11:21 35M 
[TXT]Report.html2016-03-22 14:46 1.7M 
[TXT]SD_bulkRNA_DE_annotated.csv2016-09-20 15:54 1.2M 
[TXT]SIMLR_monocle_Earlysomite.csv2016-02-24 15:10 193  
[TXT]SIMLR_monocle_LatM.csv2016-02-24 15:10 54  
[TXT]SIMLR_monocle_Sclerotome.csv2016-02-24 20:00 86K 
[TXT]SIMLR_monocle_cDM.csv2016-02-24 15:10 12K 
[IMG]T.png2015-12-01 15:13 6.0K 
[IMG]TBX6.png2015-12-01 15:13 5.9K 
[TXT]TPM_extendedData_DEgenes.csv2015-12-02 19:26 6.7M 
[   ]ULI-H3K27ME3_merged.cc.plot.pdf2016-03-22 14:47 6.8K 
[TXT]allGenes.csv2016-01-27 18:11 3.2M 
[   ]animals_300_100_inception_features_train.npz2017-01-25 17:16 23M 
[   ]animals_900_300_inception_features_test.npz2017-04-19 14:09 23M 
[   ]animals_900_300_inception_features_train.npz2017-04-19 14:09 70M 
[DIR]animals_attack/2017-02-05 20:44 -  
[TXT]atac.bds.20151113_182959_990.report.html2015-11-18 16:50 57K 
[TXT]atac.bds.20151130_140217_988.report.html2015-12-01 12:02 16K 
[TXT]atac.bds.20160114_173519_449.report.html2016-01-14 20:04 165K 
[TXT]atac.bds.20160114_201407_692.report.html2016-05-18 15:22 650K 
[TXT]atac.bds.20160224_160159_861.report.html2016-02-24 19:40 76K 
[TXT]atac.bds.20160224_214606_539.report.html2016-02-25 10:09 90K 
[TXT]atac.bds.20160512_210528_447.report.html2016-05-12 21:05 16K 
[TXT]atac.bds.20160512_211411_777.report.html2016-05-13 12:56 39K 
[TXT]atac.bds.20160512_211415_392.report.html2016-05-13 12:50 39K 
[TXT]atac.bds.20160513_181510_672.report.html2016-05-13 18:15 32K 
[TXT]atac.bds.20160513_182614_674.report.html2016-05-14 14:26 168K 
[TXT]atac.bds.20160515_230834_746.report.html2016-05-16 18:59 264K 
[TXT]atac.bds.20160516_201635_160.report.html2016-05-17 10:30 319K 
[TXT]atac.bds.20160516_201635_170.report.html2016-05-17 10:32 65K 
[TXT]atac.bds.20160517_165228_588.report.html2016-05-24 10:29 314K 
[TXT]atac.bds.20160524_192404_235.report.html2016-05-24 23:17 50K 
[TXT]atac.bds.20160525_100506_212.report.html2016-05-25 10:08 22K 
[TXT]atac.bds.20160527_112806_533.report.html2016-06-01 13:40 168K 
[TXT]atac.bds.20160602_130724_274.report.html2016-06-02 16:36 28K 
[TXT]atac.bds.20160602_181617_266.report.html2016-06-03 00:05 23K 
[TXT]atac.bds.20160719_182943_584.report.html2016-07-20 10:04 174K 
[TXT]atac.bds.20160719_184243_975.report.html2016-07-20 09:20 67K 
[DIR]bigWigs/2015-09-24 11:25 -  
[   ]blacklist.bed2015-09-10 11:39 9.3K 
[TXT]bulkDataViz.html2016-05-19 15:38 847K 
[TXT]bulkRNA_TPM_DLL1PXM.csv2016-02-23 14:45 9.2M 
[TXT]bulkRNA_TPM_supplement.csv2016-02-07 01:28 7.5M 
[TXT]bulk_tpm.txt2016-07-25 17:51 9.7M 
[   ]ccplot.pdf2015-09-09 17:38 7.1K 
[TXT]chipseq.bds.20151026_141227_500.report.html2015-10-26 14:14 14K 
[TXT]chipseq.bds.20151026_150007_173.report.html2015-10-26 15:08 8.6K 
[TXT]chipseq.bds.20151026_155009_091.report.html2015-10-26 15:55 13K 
[TXT]chipseq.bds.20151026_155025_388.report.html2015-10-26 15:54 12K 
[TXT]chipseq.bds.20160226_131231_911.report.html2016-03-18 20:27 21K 
[TXT]chipseq.bds.20160226_131231_964.report.html2016-02-26 15:49 18K 
[TXT]chipseq.bds.20160318_155417_480.report.html2016-03-18 20:18 21K 
[TXT]chipseq.bds.20160318_180917_436.report.html2016-03-18 20:18 18K 
[TXT]chipseq.bds.20160318_180917_506.report.html2016-03-18 20:26 16K 
[TXT]chipseq.bds.20160807_164435_664.report.html2016-08-08 12:29 144K 
[DIR]coda_denoising/2016-08-10 14:19 -  
[   ]combined_somitomere.bam2016-01-05 15:34 20G 
[   ]combined_somitomere.bam.bai2016-01-05 15:34 5.7M 
[   ]combined_somitomere_p9c10.bam2016-01-05 13:58 1.6G 
[   ]combined_somitomere_p9c10.bam.bai2016-01-05 13:58 2.5M 
[   ]dataset_dog-fish_train-900_test-300.npz2017-06-01 17:38 4.8G 
[DIR]deepimpute/2016-06-08 18:56 -  
[DIR]denoising_atac/2016-07-21 13:35 -  
[   ]dogbreeds_300_100_inception_features_train.npz2017-01-25 17:16 23M 
[   ]dogfish_223_images_old.npy2017-06-02 23:27 74M 
[   ]dogfish_223_old.npz2017-06-02 23:20 289K 
[   ]dogfish_900_300_inception_features_test.npz2017-05-02 23:48 4.7M 
[   ]dogfish_900_300_inception_features_train.npz2017-05-02 23:48 14M 
[   ]enron1_processed.mat2017-04-27 23:01 2.6M 
[   ]enron1_processed_dense.mat2017-04-30 17:13 202M 
[   ]enron1_processed_dense.npz2017-04-30 17:13 202M 
[   ]enron1_processed_sparse.npz2017-04-30 17:13 2.6M 
[TXT]extendedData.csv2015-09-14 14:08 5.7M 
[DIR]het/2015-08-27 15:49 -  
[DIR]homer/2016-01-15 20:43 -  
[TXT]homerResults.html2016-01-20 18:55 5.7K 
[DIR]homerResults/2016-01-20 18:55 -  
[DIR]homertest/2015-12-09 17:57 -  
[DIR]justyna/2016-06-08 16:32 -  
[TXT]knownResults.html2015-12-09 17:57 1.2K 
[DIR]kyleBulkRNA/2016-03-22 11:22 -  
[DIR]logs/2015-12-15 21:51 -  
[TXT]mapping.csv2016-09-20 15:19 22K 
[DIR]mesoderm/2016-05-16 20:37 -  
[DIR]mesoderm_data/2016-06-02 12:54 -  
[   ]mnist_attack_indices.npy2017-01-31 11:38 11K 
[   ]mnist_attack_x_iter-60.npy2017-01-31 11:39 16M 
[   ]mnist_attack_x_iter-100.npy2017-01-31 11:39 16M 
[   ]mnist_attack_x_iter-200.npy2017-01-31 11:39 16M 
[   ]mnist_attack_x_iter-300.npy2017-01-31 11:39 16M 
[   ]mnist_attack_x_iter-400.npy2017-01-31 11:39 16M 
[   ]mnist_attack_x_iter-500.npy2017-01-31 11:39 16M 
[   ]mnist_attack_x_iter-600.npy2017-01-31 11:39 16M 
[   ]mnist_attack_x_iter-700.npy2017-01-31 11:39 16M 
[   ]mnist_attack_x_iter-800.npy2017-01-31 11:39 16M 
[DIR]mnist_attacks/2017-01-31 11:42 -  
[DIR]motifscans/2016-01-24 12:13 -  
[DIR]neuron/2016-02-25 15:27 -  
[   ]orig_mnist_data.npy2017-01-31 11:38 123M 
[IMG]pca.png2015-12-01 15:13 34K 
[   ]rep1-rep2.IDR0.1.narrowPeak.gz2016-07-29 17:36 1.6M 
[IMG]rep1-rep2.unthresholded-peaks.txt.noalternatesummitpeaks.png2016-05-25 11:29 330K 
[IMG]rep1-rep2.unthresholded-peaks.txt.png2016-05-25 10:17 639K 
[TXT]report.html2016-05-25 11:29 26K 
[   ]report.pdf2016-01-15 12:30 31K 
[TXT]scDataViz.html2016-05-19 16:44 2.7M 
[TXT]scRNA_TPM_supplement.csv2016-02-07 01:32 73M 
[TXT]scTPM_extendedData.csv2015-11-03 11:31 32M 
[TXT]sc_tpm.txt2016-07-21 18:40 193M 
[DIR]seqgl_output/2016-01-21 13:15 -  
[TXT]signal.html2015-09-03 21:43 6.7K 
[TXT]signal2.html2015-09-04 12:56 24K 
[IMG]smooth_hinge_gaussian_diff_adv_t-1_rad-30.gif2017-04-12 11:49 1.8M 
[IMG]smooth_hinge_gaussian_diff_normal_t-1_rad-30.gif2017-04-12 11:49 2.2M 
[IMG]smooth_hinge_gaussian_diff_t-1.gif2017-04-12 11:49 1.9M 
[IMG]smooth_hinge_gaussian_same_dim-2_t-1_rad-10.gif2017-04-12 11:49 485K 
[IMG]smooth_hinge_gaussian_same_dim-1000_t-1_rad-10.gif2017-04-12 11:49 2.0M 
[IMG]smooth_hinge_gaussian_same_t-1_rad-30.gif2017-04-12 11:49 2.5M 
[IMG]smooth_hinge_mnist17_diff_t-1.gif2017-04-12 11:49 3.5M 
[IMG]smooth_hinge_mnist17_same_t-1.gif2017-04-12 11:49 4.4M 
[   ]somitomere2.bam2016-01-05 12:58 281M 
[   ]somitomere2.bam.bai2016-01-05 12:58 1.9M 
[TXT]treeGenes.csv2016-01-27 11:56 1.4K 
[IMG]true_rep_Rep1_vs_Rep2.overlapped-peaks.txt.png2016-01-13 14:31 628K 
[DIR]volodymyr/2017-05-15 01:15 -  

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